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Some links around the web

Some resources around the web that I have found useful:

Computing

  • JCreator: An excellent freeware Java IDE.
  • Java: Java is a very pragmatic programming language and a beautiful example of OOP.
  • Sed One Liners: Useful tidbits of sed
  • Bash: intro
  • Bash: intro continued
  • OMG Bash Guide: Advanced Scripting
  • Gnuplot: Not so frequently asked questions...
  • Gnuplot Contour Plots
  • Macports: An easy to use system for managing open source software on Mac OS X.

Physics

  • Problem Solving Web Demos: Two UCSD graduate students/TAs present physics problems intended for undergraduates taking calculus based university physics I. Their powerpoint movies are accessible, complete and enjoyable.
  • Physics Qualifying Exam Wiki: A UCSD graduate student's wiki that has not only 40 qualifying exams with solutions but also notes and study guides from our experience in first year classes.
  • Sprott's Gateway: Professor Clint Sprott's website largely dedicated to his explorations in chaos, complex systems and fractals. While at Wisconsin I worked with Dr. Sprott and a couple students exploring Lotka-Volterra models of competition. Our studies included this, this, this, and this.

Proteins

  • VMD
  • NAMD
  • GROMACS: Glycine aRginine prOline Methionine Alanine Cystine Serine
2008 J. Noel